SSBD:database

Projects

Project
Release, Updated
Organism(s)
Datatype
# of images
# of quantitative data
Paper information
Project 139-Kishimoto-TracheaDev
Release, Updated 2024-11-25
Organism(s) Mus musculus
DataType(s) branching morphogenesis of an epithelial tube
# of image datasets 85
size of image datasets 5.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kishimoto K et. al. (2018), Nat Commun 9(1), 2816
doi: 10.1038/s41467-018-05189-2
pmid: 30026494
Project 273-Kaise-NeuralStemCell
Release, Updated 2024-11-25
Organism(s) Mus musculus
DataType(s) neurogenesis, stem cell differentiation
# of image datasets 2
size of image datasets 242.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kaise T et. al. (2022), Genes Dev 36(1-2), 23-37
doi: 10.1101/gad.349000.121
pmid: 34916302
Project 276-Murai-CellularDyn
Release, Updated 2024-11-25
Organism(s) Mus musculus
DataType(s) necroptotic process, execution phase of necroptosis, apoptotic process, execution phase of apoptosis
# of image datasets 23
size of image datasets 276.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Murai S et. al. (2022), Commun Biol 5(1), 1331
doi: 10.1038/s42003-022-04300-0
pmid: 36471162
Project 282-Ohgushi-StemCell
Release, Updated 2024-11-25
Organism(s) Homo sapiens
DataType(s) morphogenesis of an epithelium, syncytium formation, cell division, stem cell differentiation
# of image datasets 4
size of image datasets 2.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ohgushi M et. al. (2022), Cell Rep 39(12), 110973
doi: 10.1016/j.celrep.2022.110973
pmid: 35732132
Project 300-Nishiyama-Rdot
Release, Updated 2024-11-25
Organism(s) Homo sapiens
DataType(s) -
# of image datasets 1
size of image datasets 635.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Nishiyama R et. al. (2023), PNAS Nexus 2(2)
doi: 10.1093/pnasnexus/pgad001
pmid: 36845353
Project 305-Mochizuki-multilineRaman
Release, Updated 2024-11-25
Organism(s) Homo sapiens, Mus musculus
DataType(s) -
# of image datasets 8
size of image datasets 1.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Mochizuki K et. al. (2023), Biomed Opt Express 14(3), 1015-1026
doi: 10.1364/BOE.480611
pmid: 36950233
Project 309-Fujioka-RamanProbe
Release, Updated 2024-11-25
Organism(s) Homo sapiens, Drosophila
DataType(s) beta-galactosidase activity
# of image datasets 16
size of image datasets 84.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Fujioka H et. al. (2023), J Am Chem Soc
doi: 10.1021/jacs.2c12381
pmid: 37057960
Project 313-Kawano-WormSleep
Release, Updated 2024-11-25
Organism(s) Caenorhabditis elegans　
DataType(s) sleep
# of image datasets 1
size of image datasets 3.6 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kawano T et. al. (2023), Cell Rep 42(3), 112267
doi: 10.1016/j.celrep.2023.112267
pmid: 36924492
Project 316-Ando-CellCycle
Release, Updated 2024-11-25
Organism(s) Homo sapiens
DataType(s) cell cycle phase transition
# of image datasets 2
size of image datasets 505.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ando R et. al. (2023), Cell Struct Funct
doi: 10.1247/csf.23028
pmid: 37394513
Project 319-Shou-RESORT
Release, Updated 2024-11-25
Organism(s) Drosophila, Homo sapiens
DataType(s) mitochondrion
# of image datasets 11
size of image datasets 11.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Shou J et. al. (2023), Sci Adv 9(24), eade9118
doi: 10.1126/sciadv.ade9118
pmid: 37327330
Project 322-Ikari-membraneRas
Release, Updated 2024-11-25
Organism(s) Homo sapiens
DataType(s) protein targeting
# of image datasets 8
size of image datasets 27.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ikari M et. al. (2023), JACS Au 3(6), 1658-1669
doi: 10.1021/jacsau.3c00108
pmid: 37388687
Project 323-Kang-ZygoteElongate
Release, Updated 2024-11-25
Organism(s) Arabidopsis thaliana
DataType(s) zygote elongation
# of image datasets 2
size of image datasets 2.9 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kang Z et. al. (2023), Plant Cell Physiol
doi: 10.1093/pcp/pcad020
pmid: 36943754
Project 334-Hashimoto-SARSorganoid
Release, Updated 2024-11-25
Organism(s) Homo sapiens
DataType(s) viral process, regulation of autophagy
# of image datasets 8
size of image datasets 37.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hashimoto R et. al. (2023), Mol Pharm 20(4), 2276-87
doi: 10.1021/acs.molpharmaceut.3c00114
pmid: 36946991
Project 255-Koganezawa-CellDyn
Release, Updated 2024-01-23
Organism(s) Escherichia coli
DataType(s) response to xenobiotic stimulus, cell division, cell growth
# of image datasets 414
size of image datasets 3.1 TB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Koganezawa Y et. al. (2022), Elife 11
doi: 10.7554/eLife.74486
pmid: 35535492
Project 331-Shimojo-MouseBrainAnatomicalRegion
Release, Updated 2023-12-24
Organism(s) Mus musculus
DataType(s) nervous system development
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 84
# of quantitative datasets 52.4 GB
Paper information Shimojo,Yuki et. al. (2024), IPSJ Transactions on Bioinformatics 17(), 33-39
doi: 10.2197/ipsjtbio.17.33
Project 268-Oishi-VesselClassification
Release, Updated 2023-09-01
Organism(s) Mus musculus
DataType(s) laminin binding
# of image datasets 21
size of image datasets 8.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Oishi M et. al. (2022), Glia
doi: 10.1002/glia.24273
pmid: 36165697
Project 277-Matsuura-Suzuki-CryoEM
Release, Updated 2023-08-30
Organism(s) Homo sapiens
DataType(s) ribosome
# of image datasets 2
size of image datasets 1.1 TB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Matsuura-Suzuki E et. al. (2022), Elife 11
doi: 10.7554/eLife.72780
pmid: 35674491
Project 254-Seita-GrowthDyn
Release, Updated 2023-08-29
Organism(s) Mus musculus
DataType(s) growth, cell division
# of image datasets 146
size of image datasets 248.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Seita A et. al. (2021), PLoS One 16(2), e0236534
doi: 10.1371/journal.pone.0236534
pmid: 33524064
Project 272-Yoshida-EGFRSignalingDyn SSBD:repository:
ssbd-repos-000272
Release, Updated 2023-08-29
Organism(s) Drosophila melanogaster
DataType(s) MAP kinase activity, epidermal growth factor receptor activity
# of image datasets 28
size of image datasets 73.6 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yoshida K and Hayashi S (2023), Development 150(5)
doi: 10.1242/dev.201231
pmid: 36897356
Project 267-Sugiura-CellDyn
Release, Updated 2023-07-20
Organism(s) Homo sapiens
DataType(s) -
# of image datasets 1
size of image datasets 202.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sugiura K and Nagai T (2022), Commun Biol 5
doi: 10.1038/s42003-022-04153-7
pmid: 36329112
Project 269-Wang-CellPhysicalDyn
Release, Updated 2023-07-20
Organism(s) Homo sapiens, Mus musculus
DataType(s) cell surface
# of image datasets 33
size of image datasets 227.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Wang D et. al. (2022), Biomaterials 280, 121256
doi: 10.1016/j.biomaterials.2021.121256
pmid: 34794825
Project 275-Sasaki-HistonDyn
Release, Updated 2023-07-20,
2023-08-02 (errata)
Organism(s) Mus musculus, Homo sapiens, Chlorocebus pygerythrus
DataType(s) H3K9me3 modified histone binding
# of image datasets 13
size of image datasets 1.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sasaki K et. al. (2022), Cell Chem Biol 29(7), 1153-1161.e5
doi: 10.1016/j.chembiol.2022.05.006
pmid: 35728598
Project 279-Suzuki-CaspaseActivity
Release, Updated 2023-07-20
Organism(s) Homo sapiens
DataType(s) cysteine-type endopeptidase activity involved in apoptotic process, cysteine-type endopeptidase activity
# of image datasets 14
size of image datasets 5.6 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Suzuki M et. al. (2022), Sci Rep 12(1), 21160
doi: 10.1038/s41598-022-25286-z
pmid: 36476686
Project 283-Kanadome-CellAdhesion
Release, Updated 2023-07-20
Organism(s) Homo sapiens
DataType(s) cell-cell adhesion mediator activity, cadherin binding involved in cell-cell adhesion
# of image datasets 2
size of image datasets 28.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kanadome T et. al. (2022), Commun Biol 5(1), 1065
doi: 10.1038/s42003-022-04023-2
pmid: 36207396
Project 291-Deguchi-SARS-CoV2
Release, Updated 2023-07-20
Organism(s) Homo sapiens
DataType(s) viral gene expression, cellular response to virus
# of image datasets 8
size of image datasets 5.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Deguchi S et. al. (2023), PNAS Nexus 2(3), pgad029
doi: 10.1093/pnasnexus/pgad029
pmid: 36896132
Project 294-Asamitsu-DNAPTP6Dyn
Release, Updated 2023-07-20
Organism(s) Mus musculus
DataType(s) ribonucleoprotein complex binding
# of image datasets 5
size of image datasets 1.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Asamitsu S et. al. (2023), Sci Adv 9(8), eade2035
doi: 10.1126/sciadv.ade2035
pmid: 36827365
Project 295-Katoh-CiliumDyn
Release, Updated 2023-07-20
Organism(s) Mus musculus
DataType(s) detection of nodal flow, calcium-mediated signaling, determination of left/right symmetry
# of image datasets 18
size of image datasets 19.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Katoh TA et. al. (2023), Science 379(6627), 66-71
doi: 10.1126/science.abq8148
pmid: 36603091
Project 274-Aini-MitochondrialDyn
Release, Updated 2023-05-29
Organism(s) Oryza sativa temperate japonica subgroup
DataType(s) mitochondrion distribution
# of image datasets 34
size of image datasets 179.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Aini H et. al. (2022), Plant Reprod 35(1), 47-60
doi: 10.1007/s00497-021-00430-3
pmid: 34633536
Project 214-Arata-BehavioralActivity SSBD:repository:
ssbd-repos-000214
Release, Updated 2023-05-11
Organism(s) Caenorhabditis elegans
DataType(s) behavior
# of image datasets 5
size of image datasets 34.9 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Arata Y et. al. (2022), Sci Rep 12(1), 10481
doi: 10.1038/s41598-022-13022-6
pmid: 35729173
Project 246-Hung-CircadianRhythm
Release, Updated 2023-05-11
Organism(s) Mus musculus
DataType(s) circadian rhythm, wakefulness, circadian sleep/wake cycle
# of image datasets 4
size of image datasets 157.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hung CJ et. al. (2021), Front Neurosci 15, 808754
doi: 10.3389/fnins.2021.808754
pmid: 35250437
Project 258-Oginuma-EmbryoDev
Release, Updated 2023-05-11
Organism(s) Nothobranchius furzeri
DataType(s) CRISPR-cas system
# of image datasets 1
size of image datasets 50.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Oginuma M et. al. (2022), Sci Rep 12(1), 11628
doi: 10.1038/s41598-022-15972-3
pmid: 35804091
Project 271-Tanaka-FilamentDev
Release, Updated 2023-05-11,
2023-05-29 (errata)
Organism(s) Homo sapiens
DataType(s) stamen filament development
# of image datasets 3
size of image datasets 1.7 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanaka A et. al. (2022), PLoS Biol 20(9), e3001780
doi: 10.1371/journal.pbio.3001780
pmid: 36067153
Project 281-Kogure-EmbryoDev
Release, Updated 2023-05-11
Organism(s) Ciona robusta
DataType(s) embryo development
# of image datasets 1
size of image datasets 470.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kogure YS et. al. (2022), Development 149(21)
doi: 10.1242/dev.200215
pmid: 36227591
Project 296-Kawabata-MouseBrainShape
Release, Updated 2023-05-09,
2023-05-29 (errata)
Organism(s) Mus musculus
DataType(s) nervous system development
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 168
# of quantitative datasets 100.2 GB
Paper information Kawabata, Hiroto et. al. (2023), 1-7
doi: https://doi.org/10.1145/3620679.3620680
Project 257-Kubota-ERKActivity
Release, Updated 2023-03-22
Organism(s) Homo sapiens
DataType(s) MAP kinase activity
# of image datasets 3
size of image datasets 141.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kubota Y et. al. (2022), Nat Commun 13(1), 4063
doi: 10.1038/s41467-022-31690-w
pmid: 35831322
Project 259-Lu-TemperatureDyn
Release, Updated 2023-03-22
Organism(s) Homo sapiens
DataType(s) heat dissipation, cellular response to temperature stimulus
# of image datasets 5
size of image datasets 3.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Lu K et. al. (2022), Nano Lett 22(14), 5698-5707
doi: 10.1021/acs.nanolett.2c00608
pmid: 35792763
Project 219-Konishi-CalciumIonDyn
Release, Updated 2023-02-21
Organism(s) Mus musculus, Canis lupus familiaris
DataType(s) G protein-coupled receptor binding
# of image datasets 170
size of image datasets 81.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Konishi Y et. al. (2021), Cancer Res 81(15), 4124-4132
doi: 10.1158/0008-5472.CAN-20-4245
pmid: 34035084
Project 220-Imanishi-ROCKActivity
Release, Updated 2023-02-16
Organism(s) Mus musculus
DataType(s) Rho-dependent protein serine/threonine kinase activity
# of image datasets 134
size of image datasets 17.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Imanishi A et. al. (2021), Am J Pathol 191(1), 194-203
doi: 10.1016/j.ajpath.2020.09.012
pmid: 33069718
Project 237-Jin-CellDynamics SSBD:repository:
ssbd-repos-000237
Release, Updated 2023-02-16
Organism(s) Mus musculus
DataType(s) -
# of image datasets 1354
size of image datasets 784.8 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Jin J et. al. (2023), Proc Natl Acad Sci U S A 120(1), e2210283120
doi: 10.1073/pnas.2210283120
pmid: 36577074
Project 244-Tokuoka-Embryogenesis
Release, Updated 2023-02-02
Organism(s) Mus musculus
DataType(s) embryo development
# of image datasets 2
size of image datasets 250.8 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tokuoka Y et. al. (2020), NPJ Syst Biol Appl 6(1), 32
doi: 10.1038/s41540-020-00152-8
pmid: 33082352
Project 245-Hirasawa-OR-PAM
Release, Updated 2022-12-13
Organism(s) Homo sapiens
DataType(s) -
# of image datasets 5
size of image datasets 14.8 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hirasawa T et. al. (2022), Photoacoustics 26, 100364
doi: 10.1016/j.pacs.2022.100364
pmid: 35574189
Project 247-Adhitama-Embryogenesis
Release, Updated 2022-12-13
Organism(s) Daphnia magna
DataType(s) embryo development
# of image datasets 4
size of image datasets 75.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Adhitama N et. al. (2020), PLoS One 15(10), e0239893
doi: 10.1371/journal.pone.0239893
pmid: 33035251
Project 253-Shimauchi-CalciumIonDyn
Release, Updated 2022-11-30
Organism(s) Homo sapiens
DataType(s) response to calcium ion
# of image datasets 13
size of image datasets 575.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Shimauchi T et. al. (2022), Cells 11(13)
doi: 10.3390/cells11132041
pmid: 35805125
Project 231-Asakura-ERKactivation
Release, Updated 2022-11-25
Organism(s) Canis lupus familiaris
DataType(s) MAP kinase activity
# of image datasets 1
size of image datasets 179.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Asakura Y et. al. (2021), Sci Rep 11(1), 4069
doi: 10.1038/s41598-021-83396-6
pmid: 33603023
Project 163-Wang-MitochondrialDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) mitochondrial fusion
# of image datasets 10
size of image datasets 388.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Wang C et. al. (2019), Proc Natl Acad Sci U S A 116(32), 15817-15822
doi: 10.1073/pnas.1905924116
pmid: 31337683
Project 186-Tsuboi-TumorDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens, Mus musculus
DataType(s) apoptosis
# of image datasets 29
size of image datasets 86.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tsuboi S and Jin T (2020), RSC Adv 10(63), 38244-38250
doi: 10.1039/d0ra06495e
pmid: 35517522
Project 187-Tsuboi-TumorDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens, Mus musculus
DataType(s) tumor suppressor
# of image datasets 5
size of image datasets 26.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tsuboi S and Jin T (2020), RSC Adv 10(47), 28171-28179
doi: 10.1039/d0ra04710d
pmid: 35519107
Project 197-Bannai-CalciumIonSignaling
Release, Updated 2022-11-23,
2023-02-16 (errata)
Organism(s) Rattus norvegicus, Homo sapiens, Mus musculus
DataType(s) calcium ion signaling
# of image datasets 7
size of image datasets 894.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Bannai H et. al. (2019), J Vis Exp(145)
doi: 10.3791/59246
pmid: 30958464
Project 199-Ichimura-MulticellularDyn SSBD:repository:
ssbd-repos-000199
Release, Updated 2022-11-23
Organism(s) Homo sapiens, Mus musculus, Canis lupus familiaris, Dictyostelium discoideum
DataType(s) cAMP-mediated signaling, calcium-mediated signaling
# of image datasets 7
size of image datasets 527.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ichimura T et. al. (2021), Sci Rep 11(1), 16539
doi: 10.1038/s41598-021-95930-7
pmid: 34400683 Ichimura, T. et. al. (2021/01/01), 2020.06.29.179044
doi: 10.1101/2020.06.29.179044
Project 209-Kimura-SkinMorphology
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) skin epidermis development
# of image datasets 2
size of image datasets 1.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kimura S et. al. (2020), Commun Biol 3(1), 637
doi: 10.1038/s42003-020-01365-7
pmid: 33127987
Project 210-Takeo-HFregeneration
Release, Updated 2022-11-23
Organism(s) Mus musculus
DataType(s) hair follicle development
# of image datasets 8
size of image datasets 377.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Takeo M et. al. (2021), Sci Rep 11(1), 1173
doi: 10.1038/s41598-020-80624-3
pmid: 33568688
Project 218-Tanaka-CellSignallingDyn
Release, Updated 2022-11-23
Organism(s) Mus musculus
DataType(s) IFN binding, interferon-gamma binding
# of image datasets 32
size of image datasets 5.6 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanaka T et. al. (2021), Cell Struct Funct 46(2), 103-111
doi: 10.1247/csf.21052
pmid: 34744115
Project 222-Dodo-RamanImaging SSBD:repository:
ssbd-repos-000222
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) metabolic process
# of image datasets 12
size of image datasets 4.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Dodo K et. al. (2021), Chem Commun (Camb) 57(17), 2180-2183
doi: 10.1039/d0cc07824g
pmid: 33527102
Project 224-Kamada-MitosisDyn
Release, Updated 2022-11-23
Organism(s) Nicotiana tabacum, Homo sapiens
DataType(s) cell division, mitotic cell cycle
# of image datasets 8
size of image datasets 7.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kamada T et. al. (2022), Sci Rep 12(1), 809
doi: 10.1038/s41598-021-04543-7
pmid: 35039530
Project 225-Seiriki-WholeBrainDev
Release, Updated 2022-11-23
Organism(s) Mus musculus
DataType(s) brain development
# of image datasets 415
size of image datasets 3.2 TB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Seiriki K et. al. (2019), Nat Protoc 14(5), 1509-1529
doi: 10.1038/s41596-019-0148-4
pmid: 30962606
Project 226-Matsumura-WholeBrainDev
Release, Updated 2022-11-23
Organism(s) Mus musculus
DataType(s) brain development
# of image datasets 490
size of image datasets 2.2 TB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Matsumura K et. al. (2020), Nat Commun 11
doi: 10.1038/s41467-020-14697-z
pmid: 32103003
Project 227-Egoshi-RamanImaging SSBD:repository:
ssbd-repos-000227
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) -
# of image datasets 20
size of image datasets 3.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Egoshi S et. al. (2021), Org Biomol Chem 19(38), 8232-8236
doi: 10.1039/d1ob01479j
pmid: 34528645
Project 228-Kanadome-CellInteration
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) homophilic cell adhesion via plasma membrane adhesion molecules
# of image datasets 8
size of image datasets 1.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kanadome T et. al. (2021), Sci Rep 11(1), 22237
doi: 10.1038/s41598-021-01481-2
pmid: 34782670
Project 229-Yamada-GeneExpression
Release, Updated 2022-11-23
Organism(s) Mus musculus, Homo sapiens
DataType(s) translation activator activity
# of image datasets 4
size of image datasets 1.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yamada M et. al. (2020), iScience 23(9), 101506
doi: 10.1016/j.isci.2020.101506
pmid: 32919371
Project 233-Nishiyama-CellDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) G protein-coupled receptor kinase activity
# of image datasets 41
size of image datasets 90.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Nishiyama K et. al. (2022), Sci Signal 15(716), eabj0644
doi: 10.1126/scisignal.abj0644
pmid: 35015570
Project 234-Kobayashi-ChemotaxisDyn
Release, Updated 2022-11-23
Organism(s) Notocomplana humilis
DataType(s) chemotaxis
# of image datasets 6
size of image datasets 3.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kobayashi A et. al. (2022), Sci Adv 8(9), eabk0331
doi: 10.1126/sciadv.abk0331
pmid: 35245108
Project 235-Hattori-SmartphoneBioImaging
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) bioluminescence
# of image datasets 4
size of image datasets 13.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hattori M et. al. (2020), Sensors (Basel) 20(24)
doi: 10.3390/s20247166
pmid: 33327525
Project 239-Miyamoto-MitochondrialDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) mitochondrial chromosome
# of image datasets 1
size of image datasets 160.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Miyamoto T et. al. (2021), STAR Protoc 2(3), 100721
doi: 10.1016/j.xpro.2021.100721
pmid: 34401787
Project 240-Yoshizawa-MitosisDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) mitotic cell cycle
# of image datasets 3
size of image datasets 74.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yoshizawa K et. al. (2020), Front Cell Dev Biol 8, 721
doi: 10.3389/fcell.2020.00721
pmid: 32850837
Project 241-Vu-TemperatureDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens
DataType(s) cellular response to ionomycin, cellular response to heating, heat transoport into cells from a micrometer-sized heat supply, response to ionomycin
# of image datasets 5
size of image datasets 118.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Vu CQ et. al. (2021), Sci Rep 11(1), 16519
doi: 10.1038/s41598-021-96049-5
pmid: 34389773
Project 242-Wazawa-CellDyn
Release, Updated 2022-11-23
Organism(s) Homo sapiens, Cercopithecidae
DataType(s) Actin filament dynamics, mitochondrial fusion, mitochondrial fission, Photoswitching of Kohinoor 2.0, Photobleaching of Kohinoor 2.0
# of image datasets 16
size of image datasets 2.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Wazawa T et. al. (2021), Microscopy (Oxf) 70(4), 340-352
doi: 10.1093/jmicro/dfab001
pmid: 33481018
Project 140-Hirata-MouseBrainSlice SSBD:repository:
ssbd-repos-000140
Release, Updated 2022-04-15
Organism(s) Mus musculus
DataType(s) nervous system development
# of image datasets 84
size of image datasets 1.6 TB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hirata T et. al. (2021), Cell Rep Methods 1(3), 100012
doi: 10.1016/j.crmeth.2021.100012
pmid: 35474959
Project 131-Wen-NeuronalNucDyn SSBD:repository:
ssbd-repos-000131
Release, Updated 2022-03-31
Organism(s) Caenorhabditis elegans
DataType(s) nucleus localization
# of image datasets 6
size of image datasets 9.2 GB
# of quantitative datasets 1
# of quantitative datasets 12.9 MB
Paper information Wen C et. al. (2021), Elife 10
doi: 10.7554/eLife.59187
pmid: 33781383
Project 138-Ito-SPBDyn
Release, Updated 2022-03-31
Organism(s) Schizosaccharomyces pombe
DataType(s) oscillatory muscle contraction
# of image datasets 5
size of image datasets 62.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ito H et. al. (2019), Biochem Biophys Res Commun 511(4), 820-825
doi: 10.1016/j.bbrc.2019.02.128
pmid: 30846209
Project 164-Ono-NeuPMCA
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) synaptic vesicle recycling
# of image datasets 2
size of image datasets 145.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ono Y et. al. (2019), Sci Rep 9(1), 4289
doi: 10.1038/s41598-019-40557-y
pmid: 30862855
Project 170-Tsutsui-HookBM SSBD:repository:
ssbd-repos-000170
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) basement membrane
# of image datasets 1
size of image datasets 236.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tsutsui K et. al. (2021), Nat Commun 12(1), 2577
doi: 10.1038/s41467-021-22881-y
pmid: 33972551
Project 172-Yoshida-ERKTracheaDev SSBD:repository:
ssbd-repos-000172
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) MAP kinase activity
# of image datasets 2
size of image datasets 62.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yoshida T et. al. (2020), Front Cell Dev Biol 8, 585640
doi: 10.3389/fcell.2020.585640
pmid: 33195234
Project 177-Kinjo-cAMPsignalingDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus, Homo sapiens, Canis lupus familiaris
DataType(s) cAMP-mediated signaling
# of image datasets 112
size of image datasets 4.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kinjo T et. al. (2020), ACS Chem Biol 15(11), 2848-2853
doi: 10.1021/acschembio.0c00333
pmid: 33074647
Project 178-konagaya-CellMigration
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) extracellular signal-regulated kinase activity
# of image datasets 160
size of image datasets 55.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Konagaya Y et. al. (2020), Cell Cycle 19(22), 3167-3181
doi: 10.1080/15384101.2020.1838779
pmid: 33131406
Project 179-Kobachi-BLVRAactivity
Release, Updated 2022-03-31
Organism(s) Homo sapiens, Mus musculus
DataType(s) biliverdin reductase
# of image datasets 89
size of image datasets 2.0 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kobachi K et. al. (2020), Cell Struct Funct 45(2), 131-141
doi: 10.1247/csf.20010
pmid: 32581154
Project 180-Watabe-Biosensoractivity
Release, Updated 2022-03-31
Organism(s) Mus musculus, Homo sapiens, Canis lupus familiaris
DataType(s) extracellular signal-regulated kinase activity
# of image datasets 115
size of image datasets 3.9 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Watabe T et. al. (2020), ACS Sens 5(3), 719-730
doi: 10.1021/acssensors.9b01941
pmid: 32101394
Project 183-Iwasaki-SpineDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) synapse organization, dendritic spine development
# of image datasets 34
size of image datasets 3.7 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Iwasaki K et. al. (2020), Eur J Neurosci 51(3), 806-821
doi: 10.1111/ejn.14634
pmid: 31793065
Project 184-Tanaka-SpineDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) dendritic spine
# of image datasets 11
size of image datasets 199.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanaka S et. al. (2020), Microscopy (Oxf) 69(1), 44-52
doi: 10.1093/jmicro/dfaa001
pmid: 31990031
Project 185-Hoshino-MyotubeCa2Signal
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) myotube differentiation, calcium signaling
# of image datasets 10
size of image datasets 304.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hoshino D et. al. (2020), iScience 23(10), 101558
doi: 10.1016/j.isci.2020.101558
pmid: 33083727
Project 188-Ipponjima-NHEKsCornification
Release, Updated 2022-03-31
Organism(s) Homo sapiens
DataType(s) mitochondrial depolarization, keratinocyte activation
# of image datasets 21
size of image datasets 265.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ipponjima S et. al. (2020), Sci Rep 10(1), 5515
doi: 10.1038/s41598-020-62240-3
pmid: 32218450
Project 189-Kobayashi-NSCsDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) cell division, negative regulation of lysosomal protein catabolic process
# of image datasets 17
size of image datasets 6.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kobayashi T et. al. (2019), Nat Commun 10(1), 5446
doi: 10.1038/s41467-019-13203-4
pmid: 31784517
Project 190-Iguchi-SpineDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) response to social isolation
# of image datasets 4
size of image datasets 309.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Iguchi R et. al. (2020), Neurosci Res 154, 27-34
doi: 10.1016/j.neures.2019.05.004
pmid: 31226269
Project 192-Hiroshima-SingleMolDyn
Release, Updated 2022-03-31
Organism(s) Cricetulus griseus
DataType(s) epidermal growth factor receptor binding
# of image datasets 60
size of image datasets 1.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hiroshima M et. al. (2020), Microscopy (Oxf) 69(2), 69-78
doi: 10.1093/jmicro/dfz116
pmid: 32090254
Project 194-Obashi-SpineDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) NA, signaling molecule
# of image datasets 21
size of image datasets 9.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Obashi K et. al. (2019), Cell Rep 27(5), 1503-1515.e8
doi: 10.1016/j.celrep.2019.04.006
pmid: 31042476
Project 196-Sueda-GeneExpReg
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) gene expression, regulation of gene expression
# of image datasets 24
size of image datasets 2.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sueda R et. al. (2019), Genes Dev 33(9-10), 511-523
doi: 10.1101/gad.323196.118
pmid: 30862661
Project 202-Miyagawa-ChemotaxisDyn
Release, Updated 2022-03-31
Organism(s) Dictyostelium discoideum
DataType(s) chemotaxis
# of image datasets 4
size of image datasets 3.9 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Miyagawa T et. al. (2018), Nat Commun 9(1), 4635
doi: 10.1038/s41467-018-07035-x
pmid: 30401901
Project 203-Tanabe-SingleDyn
Release, Updated 2022-03-31
Organism(s) Dictyostelium discoideum
DataType(s) cAMP binding
# of image datasets 11
size of image datasets 254.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanabe Y et. al. (2018), J Cell Sci 131(23)
doi: 10.1242/jcs.214775
pmid: 30404836
Project 205-Shen-CellPatterning
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) -
# of image datasets 5
size of image datasets 1.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Shen Y et. al. (2020), PLoS One 15(5), e0232518
doi: 10.1371/journal.pone.0232518
pmid: 32433673
Project 206-Miyamoto-CiliaryMorphology
Release, Updated 2022-03-31
Organism(s) Homo sapiens
DataType(s) ciliary pocket membrane, peroxisome
# of image datasets 1
size of image datasets 173.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Miyamoto T et. al. (2020), EMBO J 39(12), e103499
doi: 10.15252/embj.2019103499
pmid: 32368833
Project 207-Kuroda-FinMorphology
Release, Updated 2022-03-31
Organism(s) Danio rerio
DataType(s) basement membrane
# of image datasets 1
size of image datasets 248.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kuroda J et. al. (2020), Front Cell Dev Biol 8, 580520
doi: 10.3389/fcell.2020.580520
pmid: 33154970
Project 211-Hiroshima-EGFRTracking
Release, Updated 2022-03-31
Organism(s) Cricetulus griseus
DataType(s) epidermal growth factor receptor binding, epidermal growth factor-activated receptor activity
# of image datasets 12
size of image datasets 31.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hiroshima M et. al. (2018), J Mol Biol 430(9), 1386-1401
doi: 10.1016/j.jmb.2018.02.018
pmid: 29505756
Project 212-Kajikawa-GeckoEmbryos
Release, Updated 2022-03-31
Organism(s) Gekko
DataType(s) left/right axis specification
# of image datasets 3
size of image datasets 5.0 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kajikawa E et. al. (2020), Nat Ecol Evol 4(2), 261-269
doi: 10.1038/s41559-019-1072-2
pmid: 31907383
Project 213-Yoshida-SpindleDyn
Release, Updated 2022-03-31
Organism(s) Mus musculus
DataType(s) meiosis I nuclear membrane disassembly
# of image datasets 16
size of image datasets 43.0 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yoshida S et. al. (2020), Nat Commun 11(1), 2652
doi: 10.1038/s41467-020-16488-y
pmid: 32461611
Project 217-Sakai-iRFPactivity SSBD:repository:
ssbd-repos-000217
Release, Updated 2022-03-31
Organism(s) Schizosaccharomyces pombe, Saccharomyces cerevisiae
DataType(s) biliverdin reductase (NAD(P)+) activity
# of image datasets 8
size of image datasets 437.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sakai K et. al. (2021), J Cell Sci 134(24)
doi: 10.1242/jcs.259315
pmid: 34806750
Project 72-Kyogoku-CytoplasmNucDyn
Release, Updated 2021-11-30
Organism(s) Mus musculus
DataType(s) cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
# of image datasets 453
size of image datasets 6.7 TB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kyogoku H and Kitajima TS (2017), Dev Cell 41(3), 287-298.e4
doi: 10.1016/j.devcel.2017.04.009
pmid: 28486131
Project 70-Yoshida-KTMTDyn
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) mitotic cell cycle
# of image datasets 265
size of image datasets 371.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yoshida S et. al. (2015), Dev Cell 33(5), 589-602
doi: 10.1016/j.devcel.2015.04.020
pmid: 26028219
Project 120-Ding-CentromericDyn
Release, Updated 2021-09-30
Organism(s) M. musculus
DataType(s) meiotic cell cycle, centromeric sister chromatid cohesion
# of image datasets 351
size of image datasets 720.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ding Y et. al. (2018), Curr Biol 28(10), 1661-1669.e4
doi: 10.1016/j.cub.2018.04.019
pmid: 29754905
Project 126-Imanishi-CellMorNuCyM
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) plasma membrane
# of image datasets 46
size of image datasets 69.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Imanishi A et. al. (2018), Cell Struct Funct 43(2), 129-140
doi: 10.1247/csf.18013
pmid: 29962383
Project 127-Konishi-ERKDyn
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) cell motility, activation of MAPERK kinase
# of image datasets 143
size of image datasets 26.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Konishi Y et. al. (2018), iScience 10, 98-113
doi: 10.1016/j.isci.2018.11.025
pmid: 30508722
Project 128-Muta-IECsERKDyn
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) ERBB2-EGFR signaling pathway, ERBB2 signaling pathway, activation of MAPERK kinase, epidermal growth factor signaling pathway
# of image datasets 470
size of image datasets 62.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Muta Y et. al. (2018), Nat Commun 9(1), 2174
doi: 10.1038/s41467-018-04527-8
pmid: 29872037
Project 129-Komatsu-ERKBiosensorActivity
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) activation of MAPERK kinase
# of image datasets 13
size of image datasets 6.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Komatsu N et. al. (2018), Sci Rep 8(1), 8984
doi: 10.1038/s41598-018-27174-x
pmid: 29895862
Project 130-Sano-CellMigrationDyn
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) cell migration, activation of MAPERK kinase
# of image datasets 26
size of image datasets 4.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sano T et. al. (2018), Am J Pathol 188(11), 2564-2573
doi: 10.1016/j.ajpath.2018.07.010
pmid: 30121259
Project 161-Tanaka-MEFMitochondrial
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) gene expression
# of image datasets 4
size of image datasets 6.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanaka H et. al. (2019), J Cell Sci 132(11)
doi: 10.1242/jcs.224766
pmid: 31076512
Project 165-Kinjo-ERKactivity
Release, Updated 2021-09-30
Organism(s) Mus musculus, Canis lupus familiaris
DataType(s) extracellular signal-regulated kinase activity
# of image datasets 20
size of image datasets 1.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kinjo T et. al. (2019), Nat Methods 16(10), 1029-1036
doi: 10.1038/s41592-019-0541-5
pmid: 31501546
Project 166-Takubo-ECsTrajectory
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) endothelial cell morphogenesis
# of image datasets 5
size of image datasets 5.2 GB
# of quantitative datasets 4
# of quantitative datasets 5.4 MB
Paper information Takubo N et. al. (2019), Sci Rep 9(1), 9304
doi: 10.1038/s41598-019-45666-2
pmid: 31243314
Project 171-Ochi-Hes1DynNPCs
Release, Updated 2021-09-30
Organism(s) Mus musculus
DataType(s) translation activator activity
# of image datasets 3
size of image datasets 696.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ochi S et. al. (2020), Development 147(4)
doi: 10.1242/dev.182204
pmid: 32094111
Project 134-Tanaka-SalivaryglandDev
Release, Updated 2020-12-23
Organism(s) Mus musculus
DataType(s) organogenesis
# of image datasets 55
size of image datasets 1.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanaka J et. al. (2018), Nat Commun 9(1), 4216
doi: 10.1038/s41467-018-06469-7
pmid: 30310071
Project 142-Wen-CellShape
Release, Updated 2020-12-23
Organism(s) Drosophila
DataType(s) mesodermal cell migration, ventral furrow formation
# of image datasets 4
size of image datasets 5.5 GB
# of quantitative datasets 4
# of quantitative datasets 126.1 KB
Paper information Wen FL et. al. (2017), Biophys J 112(12), 2683-2695
doi: 10.1016/j.bpj.2017.05.012
pmid: 28636924
Project 150-Abe-SomiteDev
Release, Updated 2020-12-23
Organism(s) Oryzias
DataType(s) somite development
# of image datasets 18
size of image datasets 145.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Abe K et. al. (2019), Cell Rep 27(3), 928-939.e4
doi: 10.1016/j.celrep.2019.03.068
pmid: 30995487
Project 42-Hayashi-NeuronalCellDyn SSBD:repository:
ssbd-repos-000042
Release, Updated 2019-11-20
Organism(s) Rattus novegicus
DataType(s) neuron cell dynamics
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 198
# of quantitative datasets 87.2 MB
Paper information Hayashi K et. al. (2018), Mol Biol Cell 29(25), 3017-3025
doi: 10.1091/mbc.E18-01-0022
pmid: 30281391
Project 66-Iwata-CellDynOSNMT SSBD:repository:
ssbd-repos-000066
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) calcium imaging data
# of image datasets 2403
size of image datasets 98.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Iwata R et. al. (2017), Neuron 96(5), 1139-1152.e7
doi: 10.1016/j.neuron.2017.11.008
pmid: 29216451
Project 68-Sakaguchi-NeuronFluo SSBD:repository:
ssbd-repos-000068
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) neuronal morphology
# of image datasets 67
size of image datasets 269.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sakaguchi R et. al. (2018), Elife 7
doi: 10.7554/eLife.40350
pmid: 30454553
Project 86-Higashi-SynapseDyn
Release, Updated 2019-11-20
Organism(s) Mus musculus
DataType(s) synapse dynamics
# of image datasets 16
size of image datasets 1.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Higashi T et. al. (2018), Cell Rep 22(4), 919-929
doi: 10.1016/j.celrep.2017.12.101
pmid: 29386134
Project 94-Matsuda-Beetlehorn
Release, Updated 2019-11-20
Organism(s) Trypoxylus dichotomus
DataType(s) horn primordia dynamic
# of image datasets 5
size of image datasets 7.8 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Matsuda K et. al. (2017), Sci Rep 7(1), 13939
doi: 10.1038/s41598-017-14170-w
pmid: 29066748
Project 98-Morita-ToothEpiCellDyn
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) tooth epithelium deformation
# of image datasets 5
size of image datasets 12.4 GB
# of quantitative datasets 1
# of quantitative datasets 10.1 MB
Paper information Morita R et. al. (2016), PLoS One 11(9), e0161336
doi: 10.1371/journal.pone.0161336
pmid: 27588418
Project 99-Takagi-HairRegiPSCell
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) hair regeneration
# of image datasets 6
size of image datasets 50.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Takagi R et. al. (2016), Sci Adv 2(4), e1500887
doi: 10.1126/sciadv.1500887
pmid: 27051874
Project 100-Yamamoto-ToothDev
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) tooth dynamics
# of image datasets 7
size of image datasets 130.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yamamoto N et. al. (2015), Sci Rep 5, 18393
doi: 10.1038/srep18393
pmid: 26673152
Project 101-Oshima-ToothBioImplant
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) tissue structure
# of image datasets 8
size of image datasets 8.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Oshima M et. al. (2014), Sci Rep 4, 6044
doi: 10.1038/srep06044
pmid: 25116435
Project 102-Ogawa-SalivaryGlandDev
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) generation of salivary gland
# of image datasets 6
size of image datasets 167.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ogawa M et. al. (2013), Nat Commun 4, 2498
doi: 10.1038/ncomms3498
pmid: 24084982
Project 103-Hirayama-GlandReg
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) gland regeneration
# of image datasets 24
size of image datasets 34.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hirayama M et. al. (2013), Nat Commun 4, 2497
doi: 10.1038/ncomms3497
pmid: 24084941
Project 104-Bin-SkinImmuno
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) immnocytochemistry of skin
# of image datasets 5
size of image datasets 20.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Bin BH et. al. (2017), Proc Natl Acad Sci U S A 114(46), 12243-12248
doi: 10.1073/pnas.1710726114
pmid: 29078349
Project 105-Ono-ToothDev
Release, Updated 2019-11-20
Organism(s) Canis lupus familiaris
DataType(s) tooth development
# of image datasets 9
size of image datasets 333.4 KB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ono M et. al. (2017), Sci Rep 7, 44522
doi: 10.1038/srep44522
pmid: 28300208
Project 108-Sugita-RPEiPSCell
Release, Updated 2019-11-20
Organism(s) M. fascicularis
DataType(s) cell dynamics
# of image datasets 9
size of image datasets 6.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sugita S et. al. (2017), Stem Cell Reports 9(5), 1501-1515
doi: 10.1016/j.stemcr.2017.10.003
pmid: 29103970
Project 109-Mandai-RPEiPSCell
Release, Updated 2019-11-20
Organism(s) H. sapiens
DataType(s) iPS derived retinal pigment epithelial cell sheet
# of image datasets 15
size of image datasets 29.8 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Mandai M et. al. (2017), N Engl J Med 376(11), 1038-1046
doi: 10.1056/NEJMoa1608368
pmid: 28296613
Project 111-Kawaguchi-NPCellsDyn
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) cell dynamics
# of image datasets 30
size of image datasets 15.7 GB
# of quantitative datasets 2
# of quantitative datasets 12.3 MB
Paper information Kawaguchi K et. al. (2017), Nature 545(7654), 327-331
doi: 10.1038/nature22321
pmid: 28403137
Project 113-Kamioka-CellDyn
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) Cell dynamics, ERK activation by FRET
# of image datasets 5
size of image datasets 1.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kamioka Y et. al. (2017), Cancer Sci 108(2), 226-235
doi: 10.1111/cas.13132
pmid: 27960041
Project 114-Shiura-MouseEmbryoDyn SSBD:repository:
ssbd-repos-000114
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) X chromosome inactivation (XCI) dynamics
# of image datasets 179
size of image datasets 14.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Shiura H and Abe K (2019), Sci Rep 9(1), 3637
doi: 10.1038/s41598-019-38807-0
pmid: 30842444
Project 115-Nabeshima-DuodenumVilliCell
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) transgene expression
# of image datasets 3
size of image datasets 681.0 KB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Nabeshima R et. al. (2018), Elife 7
doi: 10.7554/eLife.36435
pmid: 30070635
Project 116-Yamada-Glycogen
Release, Updated 2019-11-20
Organism(s) Drosophila
DataType(s) tissuel immunostaining
# of image datasets 12
size of image datasets 67.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yamada T et. al. (2018), Development 145(6)
doi: 10.1242/dev.158865
pmid: 29467247
Project 118-Iraha-hESCRetina
Release, Updated 2019-11-20
Organism(s) H. sapiens
DataType(s) tissue morphology
# of image datasets 4
size of image datasets 24.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Iraha S et. al. (2018), Stem Cell Reports 10(3), 1059-1074
doi: 10.1016/j.stemcr.2018.01.032
pmid: 29503091
Project 119-Sakashita-FishVertebrae SSBD:repository:
ssbd-repos-000119
Release, Updated 2019-11-20
Organism(s) T. snyderi, C. spinosus, T. orientalis, P. olivaceus, L. setigerus, S. forsteni, M. cinereus, P. altivelis altivelis, K. punctatus, L. litulon, T. pardalis, A. hanedai, T. tonggol, S. zonatus, P. major, Z. faber, S. oblongus, H. dubius, S. pinguis, C. abei, M. sagifue, S. japonicus, S. japonica, T. japonicus, S. melanostictus, M. uradoi, R. prometheoides, T. stictonotus, C. saira, Z. nebulosa, H. typus, H. hilgendorfii
DataType(s) vertebral bodies of teleost fish
# of image datasets 141
size of image datasets 140.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sakashita M et. al. (2019), J Morphol 280(6), 778-795
doi: 10.1002/jmor.20983
pmid: 30945336
Project 121-Inoue-SingleCellDyn
Release, Updated 2019-11-20
Organism(s) Mus musculus
DataType(s) single cell dynamics
# of image datasets 29
size of image datasets 18.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Inoue H et. al. (2018), Cell Struct Funct 43(2), 153-169
doi: 10.1247/csf.18012
pmid: 30047513
Project 123-Yalikun-ZygoteDyn
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) zygote rotation
# of image datasets 2
size of image datasets 542.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yalikun, Yaxiaer et. al. (2018), Micro & Nano Letters 13(3), 306-311
doi: 10.1049/mnl.2017.0731
Project 124-Ueda-miPSRetina
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) retina differentiation
# of image datasets 31
size of image datasets 99.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ueda K et. al. (2018), Biochem Biophys Res Commun 495(4), 2595-2601
doi: 10.1016/j.bbrc.2017.12.092
pmid: 29274337
Project 125-Gessesse-CX3CR1nanodisc
Release, Updated 2019-11-20
Organism(s) -
DataType(s) protein analysis
# of image datasets 1
size of image datasets 412.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Gessesse B et. al. (2018), Life (Basel) 8(4)
doi: 10.3390/life8040054
pmid: 30400226
Project 132-Goto-CellMor
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) Electron micrographs
# of image datasets 12
size of image datasets 12.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Goto S et. al. (2018), Elife 7
doi: 10.7554/eLife.32358
pmid: 29609731
Project 135-Maruyama-LymVesselImmuno
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) Immunostaining , Immunostaining
# of image datasets 17
size of image datasets 58.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Maruyama K et. al. (2019), Dev Biol 452(2), 134-143
doi: 10.1016/j.ydbio.2019.05.002
pmid: 31112709
Project 136-Matsumiya-ESCellDyn
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) Hes7 expression dynamics
# of image datasets 9
size of image datasets 216.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Matsumiya M et. al. (2018), Development 145(4)
doi: 10.1242/dev.156836
pmid: 29437832
Project 141-Sato-CellMorphology
Release, Updated 2019-11-20
Organism(s) M. musculus
DataType(s) synapse morphology
# of image datasets 17
size of image datasets 51.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Sato Y and Okabe S (2019), Microscopy (Oxf) 68(2), 122-132
doi: 10.1093/jmicro/dfy128
pmid: 30371805
Project 73-Fujii-NeuronalMolDynCa2
Release, Updated 2018-11-15
Organism(s) -
DataType(s) molecular dynamics
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 100
# of quantitative datasets 1.1 GB
Paper information Fujii M et. al. (2017), Biophys J 112(4), 813-826
doi: 10.1016/j.bpj.2016.12.043
pmid: 28256240
Project 76-Tanaka-MuscleDyn
Release, Updated 2018-11-15
Organism(s) M. sieboldi
DataType(s) Muscle dynamics
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 2
# of quantitative datasets 272.6 MB
Paper information Tanaka, Yo et. al. (2017), Sensors and Actuators B: Chemical 242, 1186-1192
doi: 10.1016/j.snb.2016.09.123
Project 47-Noguchi-CellDyn
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) cell dynamics
# of image datasets 38
size of image datasets 90.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Noguchi M et. al. (2015), Cell Rep 13(12), 2679-86
doi: 10.1016/j.celrep.2015.11.058
pmid: 26711336
Project 55-Maekawa-ESCellDyn
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) tissue structure
# of image datasets 2
size of image datasets 54.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Maekawa Y et. al. (2016), Curr Eye Res 41(4), 558-68
doi: 10.3109/02713683.2015.1038359
pmid: 25880804
Project 57-Herawati-CellDyn
Release, Updated 2018-11-14,
2020-02-03
Organism(s) M. musculus
DataType(s) epithelial cells dynamics
# of image datasets 23
size of image datasets 2.4 GB
# of quantitative datasets 1
# of quantitative datasets 971.8 KB
Paper information Herawati E et. al. (2016), J Cell Biol 214(5), 571-86
doi: 10.1083/jcb.201601023
pmid: 27573463
Project 59-Yano-MicrotubuleImmuno
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) Microtubule immunofluorescence
# of image datasets 1
size of image datasets 1.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yano T et. al. (2013), J Cell Biol 203(4), 605-14
doi: 10.1083/jcb.201304194
pmid: 24385485
Project 74-Bansod-NSCellHes5
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) cell dynamics
# of image datasets 64
size of image datasets 124.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Bansod S et. al. (2017), Development 144(17), 3156-3167
doi: 10.1242/dev.147256
pmid: 28851724
Project 75-Minegishi-NodeCell
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) cell tissue
# of image datasets 4
size of image datasets 5.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Minegishi K et. al. (2017), Dev Cell 40(5), 439-452.e4
doi: 10.1016/j.devcel.2017.02.010
pmid: 28292423
Project 77-Aoki-CellDynERK
Release, Updated 2018-11-14,
2022-11-21 (errata)
Organism(s) Canis lupus familiaris
DataType(s) cell dynamics
# of image datasets 14
size of image datasets 1.4 GB
# of quantitative datasets 2
# of quantitative datasets 548.1 KB
Paper information Aoki K et. al. (2017), Dev Cell 43(3), 305-317.e5
doi: 10.1016/j.devcel.2017.10.016
pmid: 29112851
Project 78-Takagi-CellDyn
Release, Updated 2018-11-14
Organism(s) H. sapiens
DataType(s) cell dynamics
# of image datasets 8
size of image datasets 6.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Takagi S et. al. (2017), Clin Ophthalmol 11, 1219-1225
doi: 10.2147/OPTH.S134338
pmid: 28721006
Project 79-Inomata-HeLaCell
Release, Updated 2018-11-14
Organism(s) H. sapiens
DataType(s) intracellular structure
# of image datasets 8
size of image datasets 6.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Inomata K et. al. (2017), Chem Commun (Camb) 53(81), 11245-11248
doi: 10.1039/c7cc06004a
pmid: 28960222
Project 81-Yasugi-DmeCellDyn
Release, Updated 2018-11-14
Organism(s) D. melanogaster
DataType(s) LysoTracker-positive vesicle, nucleus
# of image datasets 4
size of image datasets 4.7 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yasugi T et. al. (2017), Sci Rep 7(1), 1619
doi: 10.1038/s41598-017-01754-9
pmid: 28487555
Project 82-Ikeda-GeneExp
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) gene expression
# of image datasets 9
size of image datasets 50.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ikeda T et. al. (2018), Nat Commun 9(1), 1387
doi: 10.1038/s41467-018-03748-1
pmid: 29643333
Project 83-Fumoto-LungDevWnt
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) organ formation
# of image datasets 18
size of image datasets 31.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Fumoto K et. al. (2017), Development 144(1), 151-162
doi: 10.1242/dev.141325
pmid: 27913639
Project 84-Ito-CellDyn
Release, Updated 2018-11-14
Organism(s) H. sapiens
DataType(s) cell dynamics
# of image datasets 7
size of image datasets 638.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ito S et. al. (2017), Nat Commun 8(1), 1834
doi: 10.1038/s41467-017-01945-y
pmid: 29184140
Project 85-Kosodo-NeuralballDyn
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) Dynamics of neural ball shape and neural differentiation
# of image datasets 3
size of image datasets 1.8 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kosodo Y et. al. (2017), Biochem Biophys Res Commun 483(1), 94-100
doi: 10.1016/j.bbrc.2016.12.187
pmid: 28063930
Project 87-CorneliaKoeverle-SpineDyn
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) spine dynamics
# of image datasets 30
size of image datasets 204.9 MB
# of quantitative datasets 2
# of quantitative datasets 0 bytes
Paper information Cornelia Koeberle S et. al. (2017), Sci Rep 7(1), 13409
doi: 10.1038/s41598-017-13728-y
pmid: 29042611
Project 89-Isshiki-SpineDyn
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) spine dynamics
# of image datasets 40
size of image datasets 2.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Isshiki M et. al. (2014), Nat Commun 5, 4742
doi: 10.1038/ncomms5742
pmid: 25144834
Project 90-Ishiwata-SpindleDyn
Release, Updated 2018-11-14
Organism(s) X. laevis, H. sapiens
DataType(s) spindle dynamics
# of image datasets 3
size of image datasets 524.8 KB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ishiwata, Shin'ichi et. al. (2017), Molecular Crystals and Liquid Crystals 647(1), 127-150
doi: 10.1080/15421406.2017.1289445
Project 91-Konagaya-AMPKactivity
Release, Updated 2018-11-14
Organism(s) M. musculus, H. sapiens
DataType(s) Cell dynamic
# of image datasets 6
size of image datasets 1.5 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Konagaya Y et. al. (2017), Cell Rep 21(9), 2628-2638
doi: 10.1016/j.celrep.2017.10.113
pmid: 29186696
Project 92-Uda-CellsigDyn
Release, Updated 2018-11-14
Organism(s) H. sapiens
DataType(s) cell signaling dynamics
# of image datasets 21
size of image datasets 1.0 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Uda Y et. al. (2017), Proc Natl Acad Sci U S A 114(45), 11962-11967
doi: 10.1073/pnas.1707190114
pmid: 29078307
Project 95-Nojima-CellMorphology
Release, Updated 2018-11-14
Organism(s) M. musculus, H. sapiens
DataType(s) cell morphology
# of image datasets 114
size of image datasets 608.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Nojima S et. al. (2017), Sci Rep 7(1), 9269
doi: 10.1038/s41598-017-09117-0
pmid: 28839164
Project 96-Kamimura-ChemotaxisDyn
Release, Updated 2018-11-14
Organism(s) D. discoideum AX2
DataType(s) dynamic of eukaryotic chemotaxis
# of image datasets 5
size of image datasets 1.0 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kamimura Y et. al. (2016), Proc Natl Acad Sci U S A 113(16), 4356-61
doi: 10.1073/pnas.1516767113
pmid: 27044073
Project 106-Jin-BreastTumorFlu
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) breast tumor fluorescence
# of image datasets 8
size of image datasets 4.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Jin, Takashi et. al. (2016), Med. Chem. Commun. 7(4), 623-631
doi: 10.1039/C5MD00580A
Project 107-Tsuboi-BreastTumorFlu
Release, Updated 2018-11-14
Organism(s) M. musculus
DataType(s) breast tumor fluorescence
# of image datasets 13
size of image datasets 11.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tsuboi S et. al. (2017), Chem Commun (Camb) 53(68), 9450-9453
doi: 10.1039/c7cc04966h
pmid: 28795717
Project 110-Makino-MembraneDyn
Release, Updated 2018-11-14
Organism(s) H. sapiens
DataType(s) membrane nakanori distribution
# of image datasets 10
size of image datasets 60.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Makino A et. al. (2017), FASEB J 31(4), 1301-1322
doi: 10.1096/fj.201500075R
pmid: 27492925
Project 21-Yasui-MolDynPTEN
Release, Updated 2017-10-03,
2018-11-15
Organism(s) D. discoideum
DataType(s) single molecule dynamics
# of image datasets 13
size of image datasets 1.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yasui M et. al. (2014), PLoS Comput Biol 10(9), e1003817
doi: 10.1371/journal.pcbi.1003817
pmid: 25211206
Project 22-Kondo-CellDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) D. melanogaster
DataType(s) cell dynamics
# of image datasets 16
size of image datasets 50.6 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kondo T and Hayashi S (2013), Nature 494(7435), 125-9
doi: 10.1038/nature11792
pmid: 23334416
Project 23-Shirai-ESCellTissue
Release, Updated 2017-10-03,
2018-11-15
Organism(s) H. sapiens
DataType(s) tissue structure
# of image datasets 2
size of image datasets 2.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Shirai H et. al. (2016), Proc Natl Acad Sci U S A 113(1), E81-90
doi: 10.1073/pnas.1512590113
pmid: 26699487
Project 24-Kanemura-iPSCellDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) H. sapiens
DataType(s) cell dynamics
# of image datasets 4
size of image datasets 10.5 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kanemura H et. al. (2013), Sci Rep 3, 2334
doi: 10.1038/srep02334
pmid: 23903667
Project 25-Ke-SeeDB
Release, Updated 2017-10-03,
2017-11-15
Organism(s) M. musculus
DataType(s) neuron structure
# of image datasets 52
size of image datasets 17.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ke MT et. al. (2013), Nat Neurosci 16(8), 1154-61
doi: 10.1038/nn.3447
pmid: 23792946
Project 26-Kinoshita-iPSCellDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) cell dynamics
# of image datasets 2
size of image datasets 105.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kinoshita H et. al. (2016), Invest Ophthalmol Vis Sci 57(1), 153-61
doi: 10.1167/iovs.15-17610
pmid: 26780319
Project 27-Iwasaki-iPSCellDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) cell/tissue structure
# of image datasets 13
size of image datasets 327.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Iwasaki Y et. al. (2016), PLoS One 11(7), e0158282
doi: 10.1371/journal.pone.0158282
pmid: 27385038
Project 28-Assawachananont-iPSCellTissue
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) tissue structure
# of image datasets 8
size of image datasets 32.2 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Assawachananont J et. al. (2014), Stem Cell Reports 2(5), 662-74
doi: 10.1016/j.stemcr.2014.03.011
pmid: 24936453
Project 29-Ke-SeeDB2
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus, H. sapiens, D. melanogaster
DataType(s) neuron structure
# of image datasets 58
size of image datasets 30.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ke MT et. al. (2016), Cell Rep 14(11), 2718-32
doi: 10.1016/j.celrep.2016.02.057
pmid: 26972009
Project 30-Inomata-CellDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) X. laevis
DataType(s) cell dynamics
# of image datasets 5
size of image datasets 1.2 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Inomata H et. al. (2013), Cell 153(6), 1296-311
doi: 10.1016/j.cell.2013.05.004
pmid: 23746842
Project 31-Matsuda-SigDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) C. l. familiaris, C. griseus
DataType(s) cell dynamics
# of image datasets 3
size of image datasets 252.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Matsuda M et. al. (2012), Sci Signal 5(220), ra31
doi: 10.1126/scisignal.2002764
pmid: 22510469
Project 32-Matsuda-SigDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) C. griseus
DataType(s) cell dynamics
# of image datasets 2
size of image datasets 164.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Matsuda M et. al. (2015), Nat Commun 6, 6195
doi: 10.1038/ncomms7195
pmid: 25652697
Project 33-Yamao-MolDynRho
Release, Updated 2017-10-03,
2018-11-15
Organism(s) H. sapiens
DataType(s) cell dynamics
# of image datasets 19
size of image datasets 805.3 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yamao M et. al. (2015), Sci Rep 5, 17527
doi: 10.1038/srep17527
pmid: 26634649
Project 34-Hayashi-CellDynSDSRM
Release, Updated 2017-10-03,
2018-11-15
Organism(s) C. l. familiaris
DataType(s) organelle dynamics
# of image datasets 3
size of image datasets 104.0 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Hayashi S and Okada Y (2015), Mol Biol Cell 26(9), 1743-51
doi: 10.1091/mbc.E14-08-1287
pmid: 25717185
Project 35-Yonemura-CellDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus, C. l. familiaris, H. sapiens
DataType(s) cell dynamics
# of image datasets 3
size of image datasets 97.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Yonemura S (2014), PLoS One 9(11), e112922
doi: 10.1371/journal.pone.0112922
pmid: 25393292
Project 36-Torisawa-MolDynEg5
Release, Updated 2017-10-03,
2018-11-15
Organism(s) -
DataType(s) microtubule dynamics
# of image datasets 3
size of image datasets 7.9 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Torisawa T et. al. (2016), Biophys J 111(2), 373-385
doi: 10.1016/j.bpj.2016.06.010
pmid: 27463139
Project 37-Arata-MolDynPar2
Release, Updated 2017-10-03,
2020-02-03
Organism(s) C. elegans
DataType(s) single molecule dynamics
# of image datasets 3
size of image datasets 1.5 GB
# of quantitative datasets 3
# of quantitative datasets 32.6 MB
Paper information Arata Y et. al. (2016), Cell Rep 16(8), 2156-2168
doi: 10.1016/j.celrep.2016.07.047
pmid: 27524610
Project 38-Inoue-ShellStruct
Release, Updated 2017-10-03,
2017-11-15
Organism(s) D. cf. damesi (NA)
DataType(s) strucure
# of image datasets 7
size of image datasets 9.4 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Inoue S and Kondo S (2016), Sci Rep 6, 33689
doi: 10.1038/srep33689
pmid: 27640361
Project 39-Shibata-MolDynPTEN
Release, Updated 2017-10-03,
2018-11-15
Organism(s) D. discoideum
DataType(s) cell dynamics
# of image datasets 2
size of image datasets 723.2 MB
# of quantitative datasets 2
# of quantitative datasets 35.8 MB
Paper information Shibata T et. al. (2012), J Cell Sci 125(Pt 21), 5138-50
doi: 10.1242/jcs.108373
pmid: 22899720
Project 40-Sakakibara-KTDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) kinetochore dynamics
# of image datasets 3
size of image datasets 6.0 GB
# of quantitative datasets 1
# of quantitative datasets 4.9 MB
Paper information Sakakibara Y et. al. (2015), Nat Commun 6, 7550
doi: 10.1038/ncomms8550
pmid: 26130582
Project 41-Hirata-XChrHiC
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) chromosome structure
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 11
# of quantitative datasets 3.9 MB
Paper information Hirata Y et. al. (2016), Sci Rep 6, 34982
doi: 10.1038/srep34982
pmid: 27725694
Project 43-Takai-SubcellStructONL
Release, Updated 2017-10-03,
2018-11-15
Organism(s) C. l. familiaris
DataType(s) lysosomes dynamics, peroxisomes dynamics
# of image datasets 2
size of image datasets 90.0 MB
# of quantitative datasets 2
# of quantitative datasets 620.8 KB
Paper information Takai A et. al. (2015), Proc Natl Acad Sci U S A 112(14), 4352-6
doi: 10.1073/pnas.1418468112
pmid: 25831507
Project 44-Hihara-NucleosomeDyn
Release, Updated 2017-10-03,
2018-11-15
Organism(s) -
DataType(s) single molecule dynamics
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 3
# of quantitative datasets 132.9 MB
Paper information Hihara S et. al. (2012), Cell Rep 2(6), 1645-56
doi: 10.1016/j.celrep.2012.11.008
pmid: 23246002
Project 48-Susaki-MouseBrainCUBIC
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) organ structure
# of image datasets 27
size of image datasets 117.1 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Susaki EA et. al. (2014), Cell 157(3), 726-39
doi: 10.1016/j.cell.2014.03.042
pmid: 24746791
Project 49-Susaki-MouseBrainCUBIC
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) organ structure
# of image datasets 1
size of image datasets 5.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Susaki EA et. al. (2015), Nat Protoc 10(11), 1709-27
doi: 10.1038/nprot.2015.085
pmid: 26448360
Project 50-Tainaka-MouseBodyCUBIC
Release, Updated 2017-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) organ structure
# of image datasets 40
size of image datasets 113.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tainaka K et. al. (2014), Cell 159(4), 911-24
doi: 10.1016/j.cell.2014.10.034
pmid: 25417165
Project 52-Suzuki-FrogTailDyn
Release, Updated 2017-10-03
Organism(s) X. laevis
DataType(s) cell dynamics
# of image datasets 1
size of image datasets 16.9 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Suzuki M et. al. (2016), Genes Cells 21(4), 358-69
doi: 10.1111/gtc.12349
pmid: 26914410
Project 53-Ichimura-CellDyn
Release, Updated 2017-10-03
Organism(s) M. musculus
DataType(s) cell dynamics
# of image datasets 4
size of image datasets 320.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ichimura T et. al. (2016), Sci Rep 6, 37562
doi: 10.1038/srep37562
pmid: 27876845
Project 20-Azuma-WormMembrane SSBD:repository:
ssbd-repos-000020
Release, Updated 2017-03-01,
2017-11-15
Organism(s) C. elegans
DataType(s) cellular dynamics
# of image datasets 1
size of image datasets 19.8 MB
# of quantitative datasets 1
# of quantitative datasets 76.1 MB
Paper information Azuma Y and Onami S (2017), BMC Bioinformatics 18(1), 307
doi: 10.1186/s12859-017-1717-6
pmid: 28629355
Project 12-Takayama-Oocyte
Release, Updated 2016-10-03,
2020-02-03
Organism(s) C. elegans
DataType(s) oocyte shape dynamics
# of image datasets 119
size of image datasets 4.7 GB
# of quantitative datasets 119
# of quantitative datasets 3.7 GB
Paper information Takayama J and Onami S (2016), Cell Rep 15(3), 625-637
doi: 10.1016/j.celrep.2016.03.040
pmid: 27068469
Project 14-Ochiai-MolDynMS2
Release, Updated 2016-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) gene expression dynamics
# of image datasets 1
size of image datasets 4.6 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Ochiai H et. al. (2015), Nucleic Acids Res 43(19), e127
doi: 10.1093/nar/gkv624
pmid: 26092696
Project 16-Tanaka-FluidDyn
Release, Updated 2016-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) cell dynamics, fluid dynamics
# of image datasets 4
size of image datasets 241.0 MB
# of quantitative datasets 2
# of quantitative datasets 2.6 MB
Paper information Tanaka, Yo and Fujita, Hideaki (2015), Sensors and Actuators B: Chemical 210, 267-272
doi: 10.1016/j.snb.2014.12.069
Project 17-Aoki-MolDyn
Release, Updated 2016-10-03,
2018-11-15
Organism(s) R. norvegicus
DataType(s) cell dynamics
# of image datasets 2
size of image datasets 157.1 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Aoki K et. al. (2013), Mol Cell 52(4), 529-40
doi: 10.1016/j.molcel.2013.09.015
pmid: 24140422
Project 18-Kunida-MolDynRho
Release, Updated 2016-10-03,
2018-11-15
Organism(s) H. sapiens
DataType(s) cell dynamics
# of image datasets 2
size of image datasets 111.4 MB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Kunida K et. al. (2012), J Cell Sci 125(Pt 10), 2381-92
doi: 10.1242/jcs.096859
pmid: 22344265
Project 19-Tanaka-FluidDyn
Release, Updated 2016-10-03,
2018-11-15
Organism(s) -
DataType(s) fluid dynamics
# of image datasets 1
size of image datasets 1.3 GB
# of quantitative datasets 0
# of quantitative datasets 0 bytes
Paper information Tanaka, Yo (2014), Micromachines 5(2), 289-299
doi: 10.3390/mi5020289
Project 11-Toyoshima-NeuAct SSBD:repository:
ssbd-repos-000011
Release, Updated 2016-05-20,
2018-11-15
Organism(s) C. elegans
DataType(s) neuronal nuclear dynamics
# of image datasets 14
size of image datasets 20.4 GB
# of quantitative datasets 14
# of quantitative datasets 67.8 MB
Paper information Toyoshima Y et. al. (2016), PLoS Comput Biol 12(6), e1004970
doi: 10.1371/journal.pcbi.1004970
pmid: 27271939
Project 13-Watabe-MolDyn
Release, Updated 2016-01-18,
2018-11-15
Organism(s) D. discoideum, R. norvegicus
DataType(s) single molecule dynamics
# of image datasets 2
size of image datasets 496.3 KB
# of quantitative datasets 4
# of quantitative datasets 151.4 GB
Paper information Watabe M et. al. (2015), PLoS One 10(7), e0130089
doi: 10.1371/journal.pone.0130089
pmid: 26147508
Project 15-Harima-GeneExp
Release, Updated 2016-01-18,
2018-11-15
Organism(s) M. musculus
DataType(s) gene expression data
# of image datasets 2
size of image datasets 398.1 KB
# of quantitative datasets 2
# of quantitative datasets 649.4 KB
Paper information Harima Y et. al. (2013), Cell Rep 3(1), 1-7
doi: 10.1016/j.celrep.2012.11.012
pmid: 23219549
Project 10-Komatsuzaki-MolDyn
Release, Updated 2015-10-03,
2018-11-15
Organism(s) D. discoideum
DataType(s) single molecule dynamics
# of image datasets 1
size of image datasets 450.0 MB
# of quantitative datasets 1
# of quantitative datasets 2.4 MB
Paper information Komatsuzaki A et. al. (2015), Small 11(12), 1396-401
doi: 10.1002/smll.201402508
pmid: 25504902
Project 7-Cronin-WormLocomotion
Release, Updated 2014-10-03,
2018-11-15
Organism(s) C. elegans
DataType(s) behavior
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 11
# of quantitative datasets 150.4 MB
Paper information Cronin CJ et. al. (2005), BMC Genet 6, 5
doi: 10.1186/1471-2156-6-5
pmid: 15698479
Project 8-Bashar-MouseEmbryo
Release, Updated 2014-10-03,
2018-11-15
Organism(s) M. musculus
DataType(s) nuclear positions
# of image datasets 1
size of image datasets 157.0 MB
# of quantitative datasets 1
# of quantitative datasets 1.3 MB
Paper information Bashar MK et. al. (2012), PLoS One 7(5), e35550
doi: 10.1371/journal.pone.0035550
pmid: 22590505
Project 9-Masumoto-Transcriptome
Release, Updated 2014-10-03,
2017-10-03
Organism(s) M. musculus
DataType(s) gene expression data
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 8
# of quantitative datasets 97.0 MB
Paper information Masumoto KH et. al. (2010), Curr Biol 20(24), 2199-206
doi: 10.1016/j.cub.2010.11.038
pmid: 21129973
Project 1-Bao-WormEmbryo
Release, Updated 2013-10-03,
2018-11-15
Organism(s) C. elegans
DataType(s) nuclear division dynamics
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 1
# of quantitative datasets 22.9 MB
Paper information Bao Z et. al. (2006), Proc Natl Acad Sci U S A 103(8), 2707-12
doi: 10.1073/pnas.0511111103
pmid: 16477039
Project 4-Keller-FlyEmbryo
Release, Updated 2013-10-03,
2019-04-24
Organism(s) D. melanogaster
DataType(s) nuclear positions
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 2
# of quantitative datasets 4.0 GB
Paper information Keller PJ et. al. (2010), Nat Methods 7(8), 637-42
doi: 10.1038/nmeth.1476
pmid: 20601950
Project 5-Keller-FishEmbryo
Release, Updated 2013-10-03,
2018-11-15
Organism(s) D. rerio
DataType(s) nuclear positions
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 7
# of quantitative datasets 48.2 GB
Paper information Keller PJ et. al. (2008), Science 322(5904), 1065-9
doi: 10.1126/science.1162493
pmid: 18845710
Project 2-Kyoda-WormEmbryoRNAi
Release, Updated 2013-09-02,
2020-02-03
Organism(s) C. elegans
DataType(s) nuclear division dynamics
# of image datasets 187
size of image datasets 1.5 TB
# of quantitative datasets 186
# of quantitative datasets 136.1 GB
Paper information Kyoda K et. al. (2013), Nucleic Acids Res 41(Database issue), D732-7
doi: 10.1093/nar/gks1107
pmid: 23172286
Project 6-Arjunan-MolDyn
Release, Updated 2013-09-02,
2018-11-15
Organism(s) E. coli
DataType(s) single molecule dynamics
# of image datasets 0
size of image datasets 0 bytes
# of quantitative datasets 1
# of quantitative datasets 190.8 MB
Paper information Arjunan SN and Tomita M (2010), Syst Synth Biol 4(1), 35-53
doi: 10.1007/s11693-009-9047-2
pmid: 20012222