Summary of 327-Okuzumi-synuclein

SSBD:database
SSBD:database URL
Title
TEM images of alpha-synuclein released in serum
Description
-
Release date
2025-01-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
32 ( Image datasets: 32, Quantitative data datasets: 0 )
Size of Datasets
462.2 MB ( Image datasets: 462.2 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Cell lines(s)
HEK293

Datatype
-
Molecular Function (MF)
Biological Process (BP)
inclusion body assembly
Cellular Component (CC)
inclusion body
Biological Imaging Method
structured illumination microscopy, fluorescence microscopy, transmission electron microscopy
X scale
146.82 micrometer, 264.58 micrometer
Y scale
146.82 micrometer, 264.58 micrometer
Z scale
3 micrometer, NA
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Ayami Okuzumi, Taku Hatano, Gen Matsumoto, Shuko Nojiri, Shin-Ichi Ueno, Yoko Imamichi-Tatano, Haruka Kimura, Soichiro Kakuta, Akihide Kondo, Takeshi Fukuhara, Yuanzhe Li, Manabu Funayama, Shinji Saiki, Daisuke Taniguchi, Taiji Tsunemi, Deborah McIntyre, Jean-Jacques Gerardy, Michel Mittelbronn, Rejko Kruger, Yasuo Uchiyama, Nobuyuki Nukina, Nobutaka Hattori (2023) Propagative alpha-synuclein seeds as serum biomarkers for synucleinopathies., Nature medicine

Published in 2023 May 29 (Electronic publication in May 29, 2023, midnight )

(Abstract) Abnormal alpha-synuclein aggregation is a key pathological feature of a group of neurodegenerative diseases known as synucleinopathies, which include Parkinson's disease (PD), dementia with Lewy bodies and multiple system atrophy (MSA). The pathogenic beta-sheet seed conformation of alpha-synuclein is found in various tissues, suggesting potential as a biomarker, but few studies have been able to reliably detect these seeds in serum samples. In this study, we developed a modified assay system, called immunoprecipitation-based real-time quaking-induced conversion (IP/RT-QuIC), which enables the detection of pathogenic alpha-synuclein seeds in the serum of individuals with synucleinopathies. In our internal first and second cohorts, IP/RT-QuIC showed high diagnostic performance for differentiating PD versus controls (area under the curve (AUC): 0.96 (95% confidence interval (CI) 0.95-0.99)/AUC: 0.93 (95% CI 0.84-1.00)) and MSA versus controls (AUC: 0.64 (95% CI 0.49-0.79)/AUC: 0.73 (95% CI 0.49-0.98)). IP/RT-QuIC also showed high diagnostic performance in differentiating individuals with PD (AUC: 0.86 (95% CI 0.74-0.99)) and MSA (AUC: 0.80 (95% CI 0.65-0.97)) from controls in a blinded external cohort. Notably, amplified seeds maintained disease-specific properties, allowing the differentiation of samples from individuals with PD versus MSA. In summary, here we present a novel platform that may allow the detection of individuals with synucleinopathies using serum samples.

Contact
Nobutaka Hattori , Juntendo University , Department of Neurology , Department of Neurology
Contributors
Ayami Okuzumi, Soichiro Kakuta, Yasuo Uchiyama


Dataset List of 327-Okuzumi-synuclein

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 12058
Datast ID ExtFig2a_CSF
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12059
Datast ID ExtFig2a_serum
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12060
Datast ID ExtFig2b_CSF
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12061
Datast ID ExtFig2b_serum
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12062
Datast ID Fig2b_TEM_DLB
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12063
Datast ID Fig2b_TEM_MSA1
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12064
Datast ID Fig2b_TEM_MSA2
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12065
Datast ID Fig2b_TEM_PD
Dataset Kind Image data
Dataset Size 8.9 MB
4D view
SSBD:OMERO
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# 12066
Dataset Kind Image data
Dataset Size 26.4 MB
4D view
SSBD:OMERO
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# 12067
Dataset Kind Image data
Dataset Size 17.7 MB
4D view
SSBD:OMERO
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# 12068
Dataset Kind Image data
Dataset Size 15.6 MB
4D view
SSBD:OMERO
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# 12069
Dataset Kind Image data
Dataset Size 15.3 MB
4D view
SSBD:OMERO
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# 12070
Dataset Kind Image data
Dataset Size 17.6 MB
4D view
SSBD:OMERO
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# 12071
Dataset Kind Image data
Dataset Size 11.4 MB
4D view
SSBD:OMERO
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# 12072
Dataset Kind Image data
Dataset Size 15.5 MB
4D view
SSBD:OMERO
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# 12073
Dataset Kind Image data
Dataset Size 14.7 MB
4D view
SSBD:OMERO
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# 12074
Dataset Kind Image data
Dataset Size 16.4 MB
4D view
SSBD:OMERO
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# 12075
Dataset Kind Image data
Dataset Size 16.0 MB
4D view
SSBD:OMERO
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# 12076
Dataset Kind Image data
Dataset Size 13.7 MB
4D view
SSBD:OMERO
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# 12077
Dataset Kind Image data
Dataset Size 13.7 MB
4D view
SSBD:OMERO
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# 12078
Dataset Kind Image data
Dataset Size 13.7 MB
4D view
SSBD:OMERO
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# 12079
Dataset Kind Image data
Dataset Size 11.7 MB
4D view
SSBD:OMERO
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# 12080
Dataset Kind Image data
Dataset Size 13.2 MB
4D view
SSBD:OMERO
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# 12081
Dataset Kind Image data
Dataset Size 13.4 MB
4D view
SSBD:OMERO
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# 12082
Dataset Kind Image data
Dataset Size 22.4 MB
4D view
SSBD:OMERO
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# 12083
Dataset Kind Image data
Dataset Size 18.1 MB
4D view
SSBD:OMERO
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# 12084
Dataset Kind Image data
Dataset Size 19.2 MB
4D view
SSBD:OMERO
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# 12085
Dataset Kind Image data
Dataset Size 17.3 MB
4D view
SSBD:OMERO
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# 12086
Dataset Kind Image data
Dataset Size 15.5 MB
4D view
SSBD:OMERO
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# 12087
Dataset Kind Image data
Dataset Size 18.0 MB
4D view
SSBD:OMERO
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# 12088
Dataset Kind Image data
Dataset Size 16.1 MB
4D view
SSBD:OMERO
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# 12089
Dataset Kind Image data
Dataset Size 18.9 MB
4D view
SSBD:OMERO
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